Scaffold DelMOWin2010_c10017958

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10017958
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3762
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → unclassified Coxiellaceae → Coxiellaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006331	Metagenome / Metatranscriptome	376	N
F012662	Metagenome / Metatranscriptome	278	N
F086945	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001795811	F086945	N/A	MNKHFDINDEITDLSFAWGGIDHKAIYDGFHYFWGNNQVTGFKTDKNGKYLRDEFGNLVAYRTSKARKRPVAWFQSSNLE*
DelMOWin2010_1001795812	F006331	N/A	MKDTRGKTWRMREWGRAQYRNQQAKLRAEGESSNTASAKRILSVMCPKLGVRIDEYMKQFGGQTEHTTPLFLTFILDMCPYEVAVIAMRTFLDHLDRNLSVSGMAFRIGKAFENEARWKQATENFHPNKLDLLKLDDRSKAMKLKQFYLYESNEERFTLWDHKLKVGLGAW
DelMOWin2010_100179589	F012662	N/A	MKEPLLQPSDMIEELMYHIMWNEFDGKLDTNHKYFPLYLSLQQLLEDETKRLEE*