Scaffold DelMOWin2010_c10015848

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10015848
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4081
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100158482	F034894	AGGA	MNVTFNLMGGGELNIPPRAISGFYKDQFTSEVIVEVGNDEYKVRDSLDEVKYILGLAR*
DelMOWin2010_100158485	F008281	N/A	MNLMCNTKHGAIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDPSIKQEIKDEIWEDMQSDFEYQKSIYKIHKLNKRESK*
DelMOWin2010_100158487	F007417	GAGG	MTRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKERKNG*