Scaffold DelMOWin2010_c10014023

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10014023
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4413
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005590	Metagenome / Metatranscriptome	395	N
F009460	Metagenome / Metatranscriptome	317	N
F017810	Metagenome / Metatranscriptome	238	N
F038193	Metagenome	166	Y
F051865	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100140231	F017810	N/A	EQRVAKEHRANHTHLDALREQKLDLGKAYDRFGTKTNADRPQGTNLNIEV*
DelMOWin2010_100140235	F038193	N/A	MQDDDLWVKSSSGELLTLQVKTTLEPRSDRSRPLNYAFTRADGDAQIFAYVAMDVRLFILRGPPTGKTVRIKPADFTQQNMDGSILRFLGGS*
DelMOWin2010_100140236	F005590	GGAG	MNEQMTLLDRWKEMATIENARMHRRMIGRDDMHPYSHKPWAIEALRKEIERCLSRHGELSVGDLCSMIEQDVTHIDLGLKTLRERRRIVKTSYIHGQQLYRVSTKDERRL*
DelMOWin2010_100140237	F009460	AGGAG	MAKWDLTKIENCSTVGDYIDEDDTQPNQPTSLMIVRSISRKADIMRMDAGRGPERRTMKQRAEEIIALCAMLERRL*
DelMOWin2010_100140238	F051865	GGAGG	MTKTTWIALMVFSSPYECADFIEKYKANLYGPVQCVIQYEETNTVRPKRKPIQENNNG*