Scaffold DelMOWin2010_c10013384

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10013384
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4541
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F031261	Metagenome	183	Y
F047975	Metagenome / Metatranscriptome	149	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001338411	F102056	AGGAGG	MNKEFEKELITLLNKYYESNWDYVWEFVGDSIETKLWLGEETTDENN*
DelMOWin2010_100133842	F010318	AGGAGG	MNVDSDKPRYIECIYEAFITFDLEELGIDWDNVKDYYIKHGTLYVDFKDGSSEEYEGEQGETDWKWSAQENILTEDWTLVEGLN*
DelMOWin2010_100133844	F047975	GAGG	MSRTKEEWAENTVDDMAWKDLYQIAYDVMLDNVKDMSDKEFKEYLIECGYEEDDDE*
DelMOWin2010_100133845	F031261	AGGAGG	MRTKTYVMSVEKNSDEVLEQLNKLQQVKQSVSLLNKHSTKKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYQAR*
DelMOWin2010_100133846	F068823	AGGAGG	MSRTYNEYYFEKLDIMDKLDEIGLLTRLLRIVYKEQGLDTIKYLVCNKTNRNFIWFNDDMMTDIINDIEEGVSYEN*
DelMOWin2010_100133848	F051470	AGGAG	MSTDNKWIHDYYDERWQHYYDELCKDIKDIGQVETIADRLAMEDVNNLEMEG*