Scaffold DelMOWin2010_c10012901

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10012901
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4643
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029593	Metagenome	188	N
F055203	Metagenome	139	N
F077802	Metagenome	117	N
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001290114	F077802	AGGAG	MTTELYPTDYVIIDSDTKKPIEGYEHIYHYTSVIDHFNEILTDKNEGWEYVSMSELSDEDQKKYKQTIKEMEEFRNECL*
DelMOWin2010_1001290115	F055203	GGAGG	MNACESCGDLYDPSDMVNTIEDFHFCYGCDEKNRELYDFMWFTRYSDKIIKEIQNDN*
DelMOWin2010_1001290116	F106087	AGGAG	MTIKIPTSTFLEIQSDLADWLMSAELGQDAYSTMVEIHNNTESYTDEGQEIFNEKYDDVEAFLNNYFE
DelMOWin2010_100129012	F029593	GAGG	MFNVSIIDFRLARVADLGKSQFWAMDRATMPPSNKNRSEVKGARSKKKEVPLQALNLKCHAIWDFSHFILFPFMGDLSSINSGIPFKRMNRSGKPLLTLFSIFWKKEFLGSAFFISLPSVFSVDIVYGKK*