Scaffold DelMOWin2010_c10012877

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10012877
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4649
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022393	Metagenome / Metatranscriptome	214	Y
F027837	Metagenome / Metatranscriptome	193	Y
F042312	Metagenome / Metatranscriptome	158	Y
F058514	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001287710	F042312	N/A	MFVLLATKPLNDGTKGFRFNFLGQKGLLRKRSQKSRGFSLFNRDKCMTAHHVGKYSLYVEHNRNQKTERRFWHFAG*
DelMOWin2010_1001287714	F058514	AGGA	MKVNGYEIVVEIDGVKSCINLDDLYPSIKDWHSATDFAMMMAREANPDAVQIDFLECGEYELEEYEGI
DelMOWin2010_100128778	F022393	GGAG	MMDDLHNNINVWHGMKKISICQHWDAPSDRLNGTAAMQEVGIIPDDDDWGSMHIKKYYASLDSLIQVLEGIRDEIDQKKCNESSGKGDARATQTATGSAT*
DelMOWin2010_100128779	F027837	AGGAG	MRYEMQNFVKFATTKKVSDVGRKPKRDEHKRLRKIARKNKSLTRKLTN*