Scaffold DelMOWin2010_c10012517

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10012517
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4729
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F028792	Metagenome / Metatranscriptome	190	N
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001251710	F029934	AGAAGG	MATIIRTCLACDGGGIAEYDKPVTDFANGGWITSTYGKCDVCDGEGDLHVLSEFTSLDMMLFLNEVAKILEDADIVDSTLDDIYGHVKDARDKVREYIKFHGYDGDDR*
DelMOWin2010_1001251712	F002733	AGGAG	MTKTNTIWLQLTHNEANALMVMLDNEIESCHNYGGGIDLDNWENIDLEAYKLLAFHKFKTWYMENCDG*
DelMOWin2010_1001251714	F029289	GGAG	MRTAWECRHTLAYVSTSAITPRYPNAANDPRLTNTADKYFTLRRQIRDKEWNREPVTNAERDKLATLKRALNDDKHYTPNF*
DelMOWin2010_100125178	F028792	GGA	MSNRGSYKVRVRVTTEREVIVEADGFDEAEIKALVEVVALVDGYDAEVLWALEHGSLSDWPIDKADD*