Basic Information | |
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Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10009451 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5611 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (11.54%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020790 | Metagenome / Metatranscriptome | 222 | Y |
F062272 | Metagenome / Metatranscriptome | 131 | Y |
F065620 | Metagenome / Metatranscriptome | 127 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOWin2010_1000945116 | F065620 | N/A | MNSIEELNTIVKDFDHKMAKIELAINNGGNSLDKQEELLLDYQMYQARKFLAIKEINKIINK* |
DelMOWin2010_1000945120 | F020790 | N/A | MNITKQMMDEKLLQIAKFEQKYGTDHGNTSVNAMKKYCTDQKYRDRVHAFNKASVETIKHYTKYGY* |
DelMOWin2010_1000945123 | F062272 | N/A | MYDRNLIANTADKIIEEVDEHINNTIHWQMDPSDFELSEFDDLYELELQIKQQLLFSLIKRVTK* |
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