Scaffold DelMOWin2010_c10009172

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10009172
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5712
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F044196	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000917210	F006684	N/A	MNKIIISYIIASAIALGLLNHAVNKAQDNIETLAEVLVHHADTLEDHRGVLLQMIDDLTVPYM*
DelMOWin2010_1000917211	F044196	N/A	MEDITDKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQVNKR*
DelMOWin2010_1000917213	F009110	AGAAG	MIASAVRYMESLKDKVPPEGEEDIIVKSGTPHMRTLGIDPHEAVKAVDKLREQGMTAKDAYVEVGMTQSQYYKTKKGVTNRK*
DelMOWin2010_1000917214	F022198	AGGAG	MKTIQQYRKDHPQLSEEQIHSAYHLTEIDAPEFAVSGFTLIARGKCLAIHENGNIAPLRLKESY*