Scaffold DelMOWin2010_c10007589

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10007589
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6383
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019390	Metagenome	230	Y
F028941	Metagenome	190	N
F029562	Metagenome	188	Y
F035078	Metagenome	173	Y
F035487	Metagenome	172	Y
F087759	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000758911	F019390	AGGAG	MNHKTGAIVTKNGKTGTIIDRARIYRCWEVKWEDETYSIERDEQLRSAASNARIKAVQPPSLVVLSSVRENLTWKVKGDNFKQFVKKGKK*
DelMOWin2010_1000758912	F087759	GGA	MENHPANIFLAAVISLVVCSGLMMGVFFLDFFLCDRQCLVPEVDIEEAQRTINYLTDDQDLERM*
DelMOWin2010_1000758918	F028941	N/A	MGTKRENNMTNCIDITNLTSDQLDTLFNDLTTGKKTFKQAVAENPSSFSVIIEDEEKEQKDVKKL*
DelMOWin2010_100075892	F029562	AGG	MKVGDLVRVSSTTVSINWKPEQGYLGLIASPVRLGADAQYVNVQSVKTGVALWVRAYRITPLNEMEGAK*
DelMOWin2010_100075895	F035078	GAGG	MKKEATKLEIFRSYLLDRIKESRVGAIDLNPDGDPTFEVMPELQNYTWVIDLARRDGIVATPTSGSAGARLTITEEKTNV*
DelMOWin2010_100075896	F035487	AGGA	MXIGXTIHLKALGSATKRTKNRIHNRGKSGFKVTKLPQRATFTDNRGVDWVMLDSLDSLWSGWLPMDEIEVINESR*