Scaffold DelMOWin2010_c10007123

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10007123
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6630
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084716	Metagenome	112	Y
F090500	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000712315	F090500	AGGAGG	MYDTKFSKKGKGKLLTFIFDNEKFQMTDTVNEHGCPDKAMCAANDYFFLPEGAWFGPRDGSKKDTWVWQKGNFFD*
DelMOWin2010_1000712316	F084716	AGGAGG	MIIKYETKSNFGYQQSKEYKVPKISNKTEKGKWLNGFVKKFFVAGNHNYKFSTAKNYIHLQTTHFNINNTKYALVNFFKNIKKLKQHHFENQVFSSYLVYQQTKEAA*