Scaffold DelMOWin2010_c10006881

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10006881
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6772
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F044800	Metagenome / Metatranscriptome	154	Y
F054892	Metagenome / Metatranscriptome	139	N
F101195	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000688111	F054892	GGAGG	MSKKQQQDEFKIVLEGGKEVNFSDLSDEQKVLVNHIRDIDIKMSRLNFEAQQYQAAKNHFSTELNASFKEGEE*
DelMOWin2010_100068815	F101195	AGGAG	MAKKYKLKDGLMPRKPSFLKLDKDSWYKLNRGKSVELDIVPDLAKNYLEEIKTQVKKEVKKDGEQ*
DelMOWin2010_100068816	F043681	AGGA	MAIAYNNITYDKIMTPLRDKIRTEFKGALPIYFDNQYKEIGTKSLRIYPVAQTLQEKRTKSYLNLYELEMDYVIKTNHNGERALDEMYKDVSRIETVLFNNSNGGDIPYFYAGMPTVDHNIDTDIPNVYISRISVPVLYEEVHERYVRFITSNNNFFVLSDGSFYIVRS*
DelMOWin2010_100068817	F044800	GAGG	MAVASTNAWKTQVEETIQSGIRNEFFASMPVFRSRDFQHRGNQFCILKGENSDPNNTMYQIIGNDYNLSLEFFMLDRKRNETTVKKFFSTISRLEEAFYSLLDIDPLFNISINEISYEDDIEFNGYRKATFDMTVRNVR*