Basic Information | |
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Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10006881 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6772 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F043681 | Metagenome / Metatranscriptome | 156 | Y |
F044800 | Metagenome / Metatranscriptome | 154 | Y |
F054892 | Metagenome / Metatranscriptome | 139 | N |
F101195 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOWin2010_1000688111 | F054892 | GGAGG | MSKKQQQDEFKIVLEGGKEVNFSDLSDEQKVLVNHIRDIDIKMSRLNFEAQQYQAAKNHFSTELNASFKEGEE* |
DelMOWin2010_100068815 | F101195 | AGGAG | MAKKYKLKDGLMPRKPSFLKLDKDSWYKLNRGKSVELDIVPDLAKNYLEEIKTQVKKEVKKDGEQ* |
DelMOWin2010_100068816 | F043681 | AGGA | MAIAYNNITYDKIMTPLRDKIRTEFKGALPIYFDNQYKEIGTKSLRIYPVAQTLQEKRTKSYLNLYELEMDYVIKTNHNGERALDEMYKDVSRIETVLFNNSNGGDIPYFYAGMPTVDHNIDTDIPNVYISRISVPVLYEEVHERYVRFITSNNNFFVLSDGSFYIVRS* |
DelMOWin2010_100068817 | F044800 | GAGG | MAVASTNAWKTQVEETIQSGIRNEFFASMPVFRSRDFQHRGNQFCILKGENSDPNNTMYQIIGNDYNLSLEFFMLDRKRNETTVKKFFSTISRLEEAFYSLLDIDPLFNISINEISYEDDIEFNGYRKATFDMTVRNVR* |
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