Scaffold DelMOWin2010_c10006725

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10006725
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6868
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013025	Metagenome / Metatranscriptome	275	Y
F024116	Metagenome / Metatranscriptome	207	Y
F028832	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100067251	F028832	AGAAG	MLVRKCAQGHKVYIFKPRGSETNTYRFSPEETISFDAQGHSYVVTSDGAVISRTDSWITAQSDYDEQCQSHHSDTIGPIKMGKHILVNGIATEL*
DelMOWin2010_100067253	F024116	N/A	MQEDWTDYLKIILFLLFVLGGLVFLGSCDSGWSISGYEI*
DelMOWin2010_100067256	F013025	GGA	MKLNTNISLENIVTIIALICSVSLAFGFMKYDVDLLKKELELKADKRQMKSDRELIEYKLDVIIKDIAEIKETLKENK*