Scaffold DelMOWin2010_c10006278

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10006278
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7143
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F007114	Metagenome / Metatranscriptome	357	Y
F013571	Metagenome / Metatranscriptome	270	Y
F024892	Metagenome / Metatranscriptome	204	Y
F030762	Metagenome / Metatranscriptome	184	Y
F064116	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100062781	F030762	N/A	MQDIKLAFINSITLTLASFSNIEQWLKITLLAVSIVYTVLKIFKLNKKRE*
DelMOWin2010_1000627811	F001728	N/A	MNDIKIKPTDKKDHYRLVLNGVDVTGEQERSVFRHIVETIDNGIGVGI*
DelMOWin2010_100062784	F013571	N/A	MEINLILLVPNAMIIGWQYHEPEKGFEYSELNLFLFFGQLQIRWE*
DelMOWin2010_100062787	F024892	GAG	MALRKVHKRKKESFSLHKVEYTDTYTKEMDCEGLAVLKWSMFDSPDKLGSGKHFMESEPVFILDEVFRKERISGFILMGYVSKTYADRIAIPSNSSHRVGKAIKFKCINKAKRFRMIRGLIQYGIERINVSNEWIYFDTDNYLKEQEFALF*
DelMOWin2010_100062788	F007114	N/A	MINKEAWEKLRKQIEYHLEEDSNLTDIRINYQVKVPERGTRNYLGLNVNINN*
DelMOWin2010_100062789	F064116	N/A	MKDLLDFKNAQITALQKKVFDLETKVSTYETYIFELTDKDCPTQYKDIVKNELLKTE*