Scaffold DelMOWin2010_c10006015

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10006015
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7309
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F004470	Metagenome / Metatranscriptome	437	Y
F005945	Metagenome	385	Y
F091960	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000601510	F005945	N/A	MNINDQTDTLQYELAKLVYRFKSEYDLNDYTIAGCLDFCKLSVLTETDDVIFAGEPDNALDMLNTGELTEDTDEEEDNTDDEIYPTF*
DelMOWin2010_1000601511	F002528	GGAGG	MKKKTTPTTKSTQPSKAAIDLDPTLPIIKIVSEEEEMHVKMELEMEDETHDMLVKWGKEIASDEDYINIAIADGLKHLIHRADATH*
DelMOWin2010_100060154	F004470	GGAGG	MARPYRRPRVARPSPLIAQYNTLGAVAAGGVTEAIATTAAAQTIVDSITSDPDIIGLSGGNAPLSDPQIDSLRADASDNLDVYNGGGA*
DelMOWin2010_100060156	F091960	GAG	MSSLLTQLGQKVKAKLDNKLNKSGGLISGDLSVSQSIQFGSYLSSALPANGTSGRVIYVTDGDGNGGPCLAIDDGTDWKIIELGGNVPTVTHILAEDGDSLTSELGDILIVEPVA*