Basic Information | |
---|---|
Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10004920 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8193 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000464 | Metagenome / Metatranscriptome | 1105 | Y |
F010001 | Metagenome / Metatranscriptome | 310 | Y |
F093692 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOWin2010_100049206 | F010001 | GAG | MQDKASKDEVRLLRAQIGNLEVQVADYQQIVKELSDKLNLYEKKYGTVFRSARNISIQK* |
DelMOWin2010_100049207 | F000464 | N/A | MKLSQQQKIRMYSHHDRDLDVEDEFWPILGILLAILGVWTTFIHWVDYVTFDAIPWWAEPFTIAPMVFLLIMKEHYDSLNPLHWWPMFWGYQAKLPDEDRITIRPLDVERIMNQHGGRLNVYIIDYQHIKFRRKKDAVIFGLRYF* |
DelMOWin2010_100049209 | F093692 | AGGA | MAGVKMSNIVIFYVPGSYGSFLSWMIERFNTARKEHVPAIVDNPVQADGSSHGHATYCKVVNMEQVQQFLEDKDFPEWGYKIWAGWPVSADKTLDQCIQETLSSMDSNDRLIVVSRVTEFESGVSWINASKKLEEARWFSSLQITNAQQLPEKYKQELDQRHFLKVNDPKFIEISINQLLFSEPSRILSVLNLLDLDICDESLFARVLEEKRSKQESVTIMNDIVAGKLTNSDDHAVASIINDTKEKK* |
⦗Top⦘ |