Scaffold DelMOWin2010_c10004525

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10004525
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8566
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062728	Metagenome	130	N
F081285	Metagenome	114	N
F086308	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000452514	F081285	GGA	MTEIEQEHAQAIDFTQERLNRIERDMAHMQKDLDELKTMLASFMKAITDYNEEVNDND*
DelMOWin2010_1000452517	F062728	N/A	MMKSLSNLETAFHALDHCKDILLERSKYGTVGDNFRQISEMGSMITGHKMTETQVCAFMIAVKLSRLSAKDEFGLNCNHIDSFVDIIGYGAIALELLEDGKEKV*
DelMOWin2010_100045257	F086308	GGAGG	MQLVFHRIKFTTNIADQTTYKDDWQLCETRDEARQQILALQNIHGDALDSWGIAAITDASEKSWVEK*