Scaffold DelMOWin2010_c10003670

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10003670
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9552
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F012934	Metagenome	276	Y
F021435	Metagenome	219	N
F036974	Metagenome	169	N
F037984	Metagenome	167	Y
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000367010	F042076	GGA	MKGEIEIFKNEDEIVEFGIHDTEFRVCIETETYWQEEAVSFNGFTDEIQYEEHEQTTTFVRIDTLECKGTLYYSKQDICSELERMLNEDNL*
DelMOWin2010_1000367011	F036974	AGCAGG	MFRTRTNVKRRQFIMNDPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYAIKYLKAYNKHDAINAFNLWKGLIIKVEICD*
DelMOWin2010_1000367015	F012934	N/A	MNTLEILKAKINLKTTIIKFKASLDELVEKHESRTDLINSMKESLQDIEHFHSVFKDFEIEYYLECKANLRNQIIIAEHKHEIDKLKEIINDAKLEL*
DelMOWin2010_1000367016	F021435	N/A	MKCPQCSQTLIWQEQHEYEDFNLEGEGVINVHLCTNIDCNVEEVYIFQKDE*
DelMOWin2010_100036705	F009889	AGAAG	MRIYSLICVLTLFSCSSNYHYRKALKKGLEPLISSDTIRIATIDSIPVVRHDTIVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRLETRVEVQRAKASKQPNYLLWIFLIVLVLAALQLFKKFI*
DelMOWin2010_100036708	F037984	N/A	MNRKETLELLIEIEEAIEHFEKRIDDAAWSNGFGLGLEFPSIKEKNTHNIIIYFMCIGRLNERFTKQLNTLK*