Scaffold DelMOWin2010_c10003567

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10003567
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9695
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N
F057340	Metagenome / Metatranscriptome	136	Y
F103165	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000356711	F001655	GGAGG	VKQPENDHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEESVRRTAKALAESYTYWPDGYVHVQTIINQEYVNII*
DelMOWin2010_1000356712	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSFDDRGNVVMPRVVLDKILFIASDELPEGDE*
DelMOWin2010_1000356714	F024320	GGAG	MTIDEYATDYGGLDDNSGPTEDPETHAMIEHLVEFDTEMYRLESRRKYKGLSYRHLESLMIDLHGEYWKDAL*
DelMOWin2010_1000356715	F030067	GAGG	MPRESWEIAHDSYYDDLEAEDYKGLDDISAWKEEEQKIIDELCKRMEKAYDDDR*
DelMOWin2010_1000356717	F030293	GAGG	MIVEMLDDRVSIEALGLIPHFFERSLYIEGQSIQSVADKMDSLYHYGGFVYPFEGTIVDNKGRYLADNDEDGPLDPIAKIKKLGFTLWVYPYSIVGLTDTKGNQKIARFD*
DelMOWin2010_1000356718	F103165	AGGA	MKTFYMCQITGKYFEDHVIADSAVRVADYPEEPSWGIYKTHQGAAILCDCDVDHAQEGLDNDS*
DelMOWin2010_100035672	F057340	AGGA	MKRLLLLLLVPGCVIEPDTRICADYGSYTYVKNKCVPLYGALICADEEVTEVFCKRYFDDEKKED*