Scaffold DelMOWin2010_c10002920

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10002920
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10778
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (30.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F031874	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000292010	F016957	GAG	MQLRNYLKDKRKLTESRTAICVEVGKTGEALFKEITGAHKSSLADDKQHIDFYWEEKKVDVKGLKKMHLTGYILLEFMNVWGGDGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRALDMCEVYSPEAVTRQNYIPYEKGLYKWLGRWNAQDVFTYLKFSDVEDLIFEVLPYKIQE*
DelMOWin2010_1000292011	F014505	N/A	MLWPFCVEHIMGRIERFYRKNFKRLTGFIKEYTDGSYSIAGDIVQMVFLRLLEMEAEGRTNFYDEEDSLNFFYVYRSCINTALKYQRAKRKVNKVSLEDLEVDFLQYETFPEERQAMERLLNYMEQEMEDFHWYDAKMVRIHMEGTSMNKIHRETSIGLTSIKNTIKNGKARIYDNLQEHWEDYTNGDYEQI*
DelMOWin2010_1000292012	F013704	N/A	MNFKRRILNGQRFIVSGMEFVCIETHAYLQTRVDGEESDIDVGSSYYIVRNTSTGKLHRIPFARIIEKDDAGEITYKR*
DelMOWin2010_1000292013	F012872	AGG	MEKEAELHRALDYLSKELSEREAMTKEQLWDVFHICADTSAVYRHITDYFTTLDKLILDARITNDKLKQELYDLKKENTRLNKALENYMDEF*
DelMOWin2010_1000292024	F031874	N/A	MVKRCLSNLKEIFLYADSQPTEIMLGMLNFILLLPATLIELGWIPLYQISGIIAGGFQLFAVARQDINLRRNASFLSFVVFTMTIVLYGSCGYFAKSASHWGWVVLWLSSLSSVKRVTTEYYHRKWNNKV*