Scaffold DelMOWin2010_c10002803

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10002803
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11030
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100028031	F077246	N/A	GIRRKGWSLMDLSNNNIVIIPESWDEIHKYLSDTFEHKAYATVLALMVENYTLHEFSKMGGYAFSEWKQEYLKDVNSNQN*
DelMOWin2010_1000280316	F100955	AGG	MIEKYDEEDIATAVTNCVDSWDMDTLVMYATEMLYKEYMNRSQPIEHIDELMEEFGP*
DelMOWin2010_100028036	F050370	AGAAG	MNYIHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYNGVGHWNNEGTNTDGTTNSVQMREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEISVRIHNA*
DelMOWin2010_100028037	F052566	GAGG	MLDKHVYIRKNGKETWCYGVIEENSNFSVVCDDENQDGIWCGDLEFTPENWDQVCKYLEENYDPNIEQIEVV*