Scaffold DelMOWin2010_c10002644

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10002644
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11325
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017220	Metagenome	242	Y
F020442	Metagenome	224	Y
F031262	Metagenome	183	N
F106094	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100026442	F020442	GGAG	MNDAKKSAIAKLAKMGLTEEEVLALFEDEEETIVAEDGESSGGESKSWQQLVMEEHVGYYNKRYNTNLTFDEYYEGVVNEEIEVHYNWKQMLGLEEPAVIPVDPDVKTEKFIKNGN*
DelMOWin2010_100026443	F017220	AGGAG	MNDPRLVALTDKLNKYVALIRTENPNMKEKDIVDRAAHMALTDQKAFEAKAGIIPTDAVADRFGDGTRIETAEDGSSIVRVDNAWQQSKGSKISSDGFHKKDHSTITMPKDIDITTPEGDKRAGKFVEEIKAAKKRGQQLQAAAERDAWDNRKVQIIVDKDVPNGD*
DelMOWin2010_100026445	F106094	AGGAG	MKLGTKIIGNFGGYTELWNGEVVETDPLTKGCVGDYAIDVKWENDGSTTTLMRSDLLPTGEGIGYMTEENYYNG*
DelMOWin2010_100026446	F031262	AGGAG	MGKLEIGAIVSFINDVGDKFTGELSEVSSDFYDDVKLEDGVVTYWSKKTKKYVPVKEKNKESIFFEIKTALGVEFATESELF*