Scaffold DelMOWin2010_c10002044

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10002044
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12858
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010834	Metagenome / Metatranscriptome	298	Y
F016957	Metagenome / Metatranscriptome	243	N
F031655	Metagenome / Metatranscriptome	182	Y
F100936	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000204410	F016957	N/A	MTKDRVDMGKQGEDLFKELTGAVKSSLEDDKKHIDFYWGDKLVDVKGLKGMHLKGFILLEFINVWGGDGWCSLNSKAEYIAFQFPDRFYVMLKNDLRAKAIALCPFFNPDKVHRQNRIPYADALYKWVGRERAKDVFTYLKLEDVLDIVFKEIPYTM*
DelMOWin2010_1000204414	F031655	N/A	MNFALDIAPLAGILVGINYWNSEMDDDYEAPKYHSLQLCFGVFALVLTWHTINEE*
DelMOWin2010_100020442	F100936	N/A	MKPKYQLHIVSDCGNRETYTSGESVKECIDKLKEYHTFGDFELQFFTKKGEQRLIEEVVSGWYLNL*
DelMOWin2010_1000204421	F010834	N/A	MSLNSLYAGKHWTFRKKIKDEYKGIVEKELARYDHYWAENFTISIRYNARADVDNFVLVSKFVADTLVSNGWVTDDSPKYYHKLCITHDKSIEKNYCEVTIKLINAQLLDEDKST*