Scaffold DelMOWin2010_c10001447

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10001447
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15263
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.95%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007652	Metagenome / Metatranscriptome	347	Y
F010828	Metagenome	298	N
F015852	Metagenome / Metatranscriptome	251	Y
F031053	Metagenome	183	Y
F034543	Metagenome	174	Y
F053137	Metagenome	141	N
F058891	Metagenome / Metatranscriptome	134	N
F060835	Metagenome	132	N
F071094	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000144710	F058891	AGAAG	MHKKDVLLFIKERHEALSKMKASQFAGRITREEQKLYQEAWSYIDPKAKVCFSCGRSPQIMSVALLNYYEANKPKRRKKK*
DelMOWin2010_1000144711	F010828	N/A	VRDKAVIDLIGDEELWELANKICSVPDDLIQEVALVLMELPEEKWQQINEGGYLRFYVVRTMLNMATSPRSSFSKLYNLHNYERADYDREDYDEEKEADLQLLETLMNELHWYDKKILEMWLEEGSYRKVAAKVDIPFKSIGNSVKRALTTLKQNYYGIHLERLVRGNVGLHLDRRYRTGHTDKEVG*
DelMOWin2010_1000144716	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGTSAFKHQLKNKGNSFAKEVDKFLNSTYSNGSTDTSIVNLIEGCQDAIDKLVENSVTVTE*
DelMOWin2010_1000144719	F034543	N/A	MIQIVKIDEVIAEANAKKITAYRIAKETRLSTQTVYAYFKGERVSVRTQEVIINYINKY*
DelMOWin2010_1000144731	F071094	GGA	MIIFLLTVSVCLLLLVVGLLLYIGYKVRQFEDTQDVIFDAAVNAEERNREIELNQEAILNAYSRQN*
DelMOWin2010_1000144733	F060835	N/A	MTYHTNPITREAIDKLLAKNASNQANLGTESTDLERFETKIKWAELLREIRTLDPEFAEMVQPQ*
DelMOWin2010_1000144734	F015852	AGCAG	LGGNIAIHLIKAYTPYLLAFVLGVIIASKGCGEPEVVTTVIDRPVPTVEYVDRWRTDTVRFVSKKVITQRDTIYQDRIVNRLDTLFVVDTISIVEAWLTEVAKYDTTVNDIRLTWQNYQNRTENLSVTIQEKSQPLSWALGVHGLVGLQSDFVESYKPLFGVGLQATIKRTYISANYGFNGQHFIGVGVGRNIINR*
DelMOWin2010_1000144737	F007652	N/A	MNEIKYPAVRTYYICFDDDRTEVKSYGWVEPNQVFTTVWIFDEFTEEEQWLAELANWGIIPEIDEQGNVVL*
DelMOWin2010_100014479	F031053	GAG	MKQNENHENYGLYITQNTYTMDFYCFSRDVADLYWSGEPCKKASGKTSQEALSNYKNGVYSDK*