Basic Information | |
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Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10001371 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15692 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (43.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024929 | Metagenome | 204 | N |
F070680 | Metagenome | 123 | N |
F079993 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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DelMOWin2010_100013712 | F079993 | N/A | MKKVFLLLLILPFTGCSTLNDTINTLPGYEFEQFDYSRTGNITSTTLSASNAKIENNMLIVEKAHVTHSNPIFGVNISVQGLKRPAVVSGTGGVK* |
DelMOWin2010_1000137123 | F024929 | N/A | MGARPSTGKESTIHRHTTMKQVVTKISLINEDPKAEYLNNPIFNCIEVGPDDEAAGSFLRIKLTNETAEGLQPGEITLDWNDWDAITKTVEQYRSQWDWE* |
DelMOWin2010_100013714 | F070680 | GAGG | MEIDANLVFAGIGACAVVGGAIMAYGELKTKVVGLTQRASSADQAHEKIYDKVSKLEEETKVQRVQIDDIRKNNNKLFELVEGQSRTLGEIKQELAVIISKLKSHG* |
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