Scaffold DelMOWin2010_c10001371

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10001371
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15692
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (43.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024929	Metagenome	204	N
F070680	Metagenome	123	N
F079993	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100013712	F079993	N/A	MKKVFLLLLILPFTGCSTLNDTINTLPGYEFEQFDYSRTGNITSTTLSASNAKIENNMLIVEKAHVTHSNPIFGVNISVQGLKRPAVVSGTGGVK*
DelMOWin2010_1000137123	F024929	N/A	MGARPSTGKESTIHRHTTMKQVVTKISLINEDPKAEYLNNPIFNCIEVGPDDEAAGSFLRIKLTNETAEGLQPGEITLDWNDWDAITKTVEQYRSQWDWE*
DelMOWin2010_100013714	F070680	GAGG	MEIDANLVFAGIGACAVVGGAIMAYGELKTKVVGLTQRASSADQAHEKIYDKVSKLEEETKVQRVQIDDIRKNNNKLFELVEGQSRTLGEIKQELAVIISKLKSHG*