Scaffold DelMOWin2010_c10001355

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10001355
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15770
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F005843	Metagenome / Metatranscriptome	388	Y
F091845	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100013551	F091845	AGGAG	MSYNCKKCKGTGLISYSHQHNPFDDSVTITEACDCNTGPTDAEVDMLNAQLKSASLYGTLDEIIKIVQGIKHTPTRNQLWRSYGVIND*
DelMOWin2010_1000135510	F000256	AGCAGG	MADGVSGVGNAPFNVGSDIHAQTRVRERIETHLVEQRVEKEHRANHSHLEALAKQRFDLNETYDRFGRKTNADRPQGTKINIEV*
DelMOWin2010_100013553	F005843	GGTGG	MNIAEPVFMAFVIFSSPDECKAFSEYYDLERIFLPQCVEMGGEADYRRPIPNIKPRPRPEQGEQNG*