Scaffold DelMOWin2010_c10000802

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000802
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 20151
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (87.04%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001523	Metagenome / Metatranscriptome	678	Y
F005178	Metagenome / Metatranscriptome	409	Y
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F036003	Metagenome	171	N
F058518	Metagenome	135	Y
F070649	Metagenome	123	N
F081883	Metagenome	114	N
F089518	Metagenome	109	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000080215	F081883	GAGG	MTPRIEKIYNLIYYSDFDEAEIKQLAIGLLGMTLNDMAWHQTANTVSSYKLDDEIELDFDEGDNLR*
DelMOWin2010_1000080216	F058518	GAGG	MRYKDITIEAEDLECDETDTIYKAIKNHILDVGIATPKTLTGFNWRLDVRMRMDNYDT*
DelMOWin2010_1000080217	F096197	AGG	MTNFTKEQLKTLRNEINSLLLTHDFEETCDLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMSILHRLDTSKVHDYIDHKAVRYRMQLVGYKTKARKMPWIVKDLLSMSGNEYKLTDAQARQWFEYEVQP*
DelMOWin2010_1000080218	F089518	AGG	MEYVIHISKKGGECFAYHSTKDKSELDRLVSKYLRMKGITIEVKKRFLS*
DelMOWin2010_1000080220	F021206	AGGAG	MTVTLNQILAMENVLATRKIPSDISAMAKAKRYSESKQKVITLGDQPLHYVLRILAKEGLDK*
DelMOWin2010_1000080222	F013377	GGA	MTKKILKHWALFYKNGERHFINAPTRAELDSAVFEGAYAPRFDSVTYYVEYERDIKDTQHNQVHEVYLK*
DelMOWin2010_100008023	F070649	GAGG	MQPKELPCHVRIRYEPTFKQKGRKCKLYGKTFLNMAEAARYWGITYAWATEQINKGWNQDSFPPKARKDYK*
DelMOWin2010_100008024	F005178	AGGAG	MMYILVWMQLFSTQSVDHYQLGSYATLEECQIELSKAAKMITHKSETVACLEVEVNQ*
DelMOWin2010_1000080240	F001523	AGGA	MKTTAIATVALLTATSVSAMDFPVAGQTVSIGASSDLNYTTGVEDWEWELTPSAGLTAMGIGFTMATDIDMLELEDGDIFQGLDFTVDYTVPSTNVNLYTEVSTDSDLEFGDITVGATVSF*
DelMOWin2010_100008029	F036003	AGGAG	MNTRMFNYKNQSVMFINCSLDHCYNTADYMIKREKNNGYWKPRLYDDYDQDHPSVESIYDWVEIKDSVTDLVPITAEEVEKAYNELR*