Scaffold DelMOWin2010_c10000650

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000650
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22162
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (41.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006827	Metagenome	364	Y
F010801	Metagenome	299	Y
F018644	Metagenome	234	Y
F055644	Metagenome / Metatranscriptome	138	Y
F061785	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100006501	F010801	N/A	EDXDDLFDRIRGNLGEHFSNYMFIVMDDDGDLFYDYTNHRVGRMLVSETQKDMDSDLDALDIIWEAEEEEEEADGTDIY*
DelMOWin2010_1000065014	F006827	N/A	MSEETDNYIIYDTLEDALVKADAEGARRGYAYHRVGSGTRYKTYPQVTADDKYALLVNGYELTEDEESAITNSVTFPATEEV*
DelMOWin2010_1000065015	F061785	GAGG	MEETLQRLSVGIFGWIATDTLQSVDLVLGVVSKSVLITLTVLSIYKLWKELK*
DelMOWin2010_1000065018	F018644	N/A	MEFFKYIFDNYKDNMLGMAFAYIGIISIVMMFLPKENFISKLFREFASIFTSLFKK*
DelMOWin2010_1000065019	F055644	N/A	MSHEATTRPLAITYSDYDWGDNFASNDYNYFYVPSIPEWAYSEFDGLLYEGVQYNWSEVDYRLSVEYNSVPEPAFVGLFMGICLLALTIFKRK*