Scaffold DelMOWin2010_c10000629

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000629
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22401
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051151	Metagenome / Metatranscriptome	144	Y
F059044	Metagenome / Metatranscriptome	134	Y
F061772	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000062916	F051151	N/A	MKDYQALAEVIMTEPEFRPGGFVYKHIKEAKSDSLVSIKSAVDNMSDLYDLEREDIGQISEIILKKFTDKQQ*
DelMOWin2010_1000062928	F059044	AGGA	MKHMIKWLKITAGINIYLSVIMTFVFLTLLFAIVSDYNLTNADEYVRFLIKEELNKPNANN*
DelMOWin2010_1000062930	F061772	N/A	MNHVTKYTNSLRNYAFAVASAHIVAFAWLYPMALMYIIVGPVMFYVLFLWCELTYEIDVGHRQRLIKAIREADNQITKDVLTWELILHEEHSIFGNTSNDRLGF*