Scaffold DelMOWin2010

Basic Information
Taxon OID	3300000117 Open in IMG/M
Scaffold ID	DelMOWin2010_c10000592 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000117 Open in IMG/M

Scaffold ID

DelMOWin2010_c10000592 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	22834
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

22834

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022610	Metagenome / Metatranscriptome	213	Y
F041654	Metagenome / Metatranscriptome	159	N
F069860	Metagenome	123	N
F079817	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000059216	F069860	N/A	MKNLLYLLTLTIFTTGCYQYSEPSYPTLDGTYILRSITVNSTDILGSELTDETHDDPMTVVYPNPIGPLDTMKVGKTRISISGNRLYVGYYLENGGDHWRENYDINITQDFITGRWINMNVTYTPEGIDWQTYRHYLIIEDGLEYMVLECPKQYEDGVYGNEYSYSLTFYREGP*
DelMOWin2010_1000059223	F041654	N/A	MRGDQRIKMSLKKIVKKNLNDTKTVKVTKLTESKIVKGRFGIISESVNLNSRIQTTKFFNKLFVESKNLVDMGISTNTINEDLIMVLKGLMGDKNSQVIDTLKDRLITYLESKLDMDSFEKEVLKQSILELEEDEFPQVFSDKRFLARIITDTFIREFGEKYLNGLTDMTRELLMNRIDNEDFKRELEDKFTIALDSLLDSIESNMDSKLKGIRDSVLS*
DelMOWin2010_100005925	F022610	N/A	MKIKLTETQFNKVIKNLITEQGLYGNTSDVVDYDLPEFLSDTIILQSINDWSDVEKSLKELHKRLIRLEKGLDSGGSHNKAYSTGTDYSAKNKKDRDLEKAADSLERDEKLKSDLEQLRKDLDL*
DelMOWin2010_100005929	F079817	GAG	MTVHEISNYFNQCPNMEKAYKEHKNIGRLIRSNVFKHTSNRHWDNMDLLYKITYIKVSRNDDLLVNIKVSGTMGRSSWRSKENTCVTDYVKINHSTSRRRNDDIRRAVRDDVQKFFRLFGMDTYKIEIGKVKVCKEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOWin2010_c10000592

Overview

Ecosystem & Geography

Associated Families

Sequences