Scaffold DelMOWin2010_c10000322

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000322
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 29345
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (36.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016279	Metagenome / Metatranscriptome	248	N
F030099	Metagenome	186	N
F033809	Metagenome / Metatranscriptome	176	N
F049642	Metagenome / Metatranscriptome	146	N
F076110	Metagenome / Metatranscriptome	118	Y
F077337	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100003221	F076110	N/A	IMQYPNGTKLTGLGLNLTLEDTEFLTEAGSCGEDSWLYHWSTTEGRSFLTTDIELAGYLADGATLS*
DelMOWin2010_1000032212	F049642	N/A	MKIIVVISGFTQKNHQNTGSKQLWRELRLLDDICEGEHAMVQLKEWNSDWKKYAKYINSLKPTEVLICCYSWGGGYGMPQLSKRLECDVSVVACDPVYHSPTILGRWWALFDRKIKLDKNVKVVGWVSQRGDRLDGDKLVGGKSICRERTYDYDHAEIDDSPEYHKAAVLAAKTYLQT*
DelMOWin2010_1000032218	F016279	N/A	MNLSEYLATNPTAEEHNFNYLLIPAEPRDSMIAKQDTLTTSNHISPVLLIDGRYGACCDLYTEVGVGGIYHELWEMLDQAKLEECEVVDKAAFLALLPPDPDPEEEV*
DelMOWin2010_1000032222	F077337	N/A	MGKILTDDELTALAAKMELRRQWLMSPAGRARRDEVMRQYMKKTYDGNKISNGGALSFKGCYDVFEQKEMEYECKAIDGTDFVNPDYLKFKQKDFKERGLTGDWLN*
DelMOWin2010_1000032228	F030099	GGAGG	MTESEHETCKSLAEQLGKPYTAMSIGKLRAAVCSEEDLDGKYILPTGVLKITAQIKGEIKVIEEASPAIVTVRVLHHQTGNPRFIFAEDPDTRRKVRVSVPKRHKHIINQVGKRLKVNKVDQDGTSYYRYPAI*
DelMOWin2010_1000032230	F033809	N/A	MTTMSEELQLETKNFITKKLRDAQEATGHGRAWCKREPKKWALVAQHIIQKPDEVSTFLRKNKITKNFYYDVQTELMADPESSEIRNAWASEISSVLFQGLDTYRKSQNQYSDRVESGDIEIDGNELFKQGKSLQAFNDIHSKLTGNNVQRVVVEHKTTLDEAEEYARKMLEGIPEVEVVD*