Scaffold DelMOWin2010_c10000241

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000241
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 33025
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059059	Metagenome / Metatranscriptome	134	N
F060813	Metagenome	132	N
F089015	Metagenome / Metatranscriptome	109	N
F095595	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000024116	F089015	GAGG	MKITAEQFVESLARMSDAEKQKAANLLVNKWFHLTQSFTGMVDAELQDQHINEQAEAFEIQRAAEVGTKLF*
DelMOWin2010_1000024126	F060813	GAGG	MENVKKLKYIVYTQMNKRGLKGEFDNAKDAIKWAKENVYMFDYLKERKDTWEVLFEENLVWIDKGEVVEC*
DelMOWin2010_1000024152	F095595	AGGAG	MVEPIRYGAGGIPMVNQEPPKVEPVEKISKDKKQKQPLQEIYGDDGFDEEHGDKE*
DelMOWin2010_1000024154	F059059	GGAG	MPQLTETEINIRRQTLEKDLETVKDGLNKIDAERTNLVAQHHAISGAIQQCDLFLSDLKTVVSETTDSSIPSKKKG*