Scaffold DelMOWin2010_c10000182

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000182
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 36609
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (43.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056968	Metagenome	137	N
F077252	Metagenome	117	N
F077932	Metagenome	117	N
F084169	Metagenome	112	Y
F090340	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100001823	F077252	GAG	LGTTVGEVSEATEFLMMAQNYQSQIDLISVKITRLMGGVKDDLIHELVDQAVLNKESIEWIVEEVQSWERYTQELKI*
DelMOWin2010_1000018232	F056968	N/A	MNNNPDLVHKCLDTITPGWQSVLVATVTEDGFEYDVFNKMDEEHFQENLAVLLALVAKKSMQELEKIDWKNN*
DelMOWin2010_1000018233	F084169	AGG	MNGKGDRNRVSNWDKFYEGYNRVFRPQEPFYTDIKEYESRFRGGKNSNEGVFSGGNLDSIQEDTSEDVGANPTSSTIEKKPFRSDPIKHDITRII*
DelMOWin2010_1000018241	F090340	N/A	MKYNTEKIRALGIDPSDLRTSLYCHWEMEKLDYHLDRMVSYLVENRLPHTLSRIVIDEIEEAKDELRKIFDYLYEKEGRLDK*
DelMOWin2010_1000018249	F077932	N/A	MIQEDFKELALQVKEMLSSDSGYVKESVAPMIGGGFTGDLMPVGYHVFPARQVCRTELGKTLMDEVTMFHQKVIDIDDDNTVIVYAESSLLPNETIRILESWMQRFLEETMYEL*