Scaffold DelMOWin2010_c10000101

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000101
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 45322
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (48.28%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F021099	Metagenome	220	N
F027355	Metagenome / Metatranscriptome	195	Y
F042879	Metagenome	157	Y
F047384	Metagenome	150	Y
F060872	Metagenome / Metatranscriptome	132	N
F077249	Metagenome	117	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000010113	F021099	N/A	MAFSDLTLTRNNIDALEELTFKGVNVTTGSTTLNLSEKDNLILGKAIKLLKTDILENLREYINDTTYSTETALLDAIHAADSEELLVDLLSYKFLELWFAQDATHKDSYSFAKAGKYYQMYNQYLTANLRRLSGLLTKPKTTPRVRFMSLY*
DelMOWin2010_1000010117	F088821	GGA	MIDSSKLYSVPKDVVEDIVMKESRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIAQSTIESDDEYRERLGRMKLFPLEQKFFSAQQRIYDENNVNRNYPENKEFWMYKESNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGDGSPVTDNNGNVVPYNFVVRPHEIWNFEVKQGILTLLVTRQMYYDIQNVKKHKWTAYTPEYICVYIEENGLKKKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYSLKGMYLAASELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDDQQIPNNMLYQADMSGLQHLRDVIFGDLMSLIFSMAQVRDKSIVKSNVSGSAKRFDNVEEQGLLATTAMDMEMVEMQVLKRMAKVRDEDPTDYHVTYSKHYDLSSAAEIFSDITEGMQYHVLPLPLLKKLTAEYMRKRSMPQEDIVSVMDHFDNFGIPKTSGDLKNLIDILPQEELQRQAELGIDLNSEQ*
DelMOWin2010_1000010120	F060872	N/A	MREPDKIWEIPLWETNHSKQRLFQEEAMDFLSYKLGYEMSEETDDPTRKAYKHFDGYNHYPDGNLTALDYDPSHPVWLCADFNRSPHCWALLQVKKSRNGLKKYVIFDEIFSREALTTEQALKAVELLNKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDEHDISYKNELDIQNPKRKVRVDKVNNVIFAGKNGERRLLVNTRCDNVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNERGSNSPMYVLR*
DelMOWin2010_1000010122	F010211	N/A	MPQKSNWSDLLVNVVGHDPPDDSLNLRNSFIENCLADQDGNKVTQAQIHLTMQQGIYDWEQEALSKNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFMSDMYRYWCKEHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK*
DelMOWin2010_100001013	F047384	N/A	MPKLTNITIVTDAGGTETLTIQNYAETDELQFWGSTFDEAIDGTLRGNFKDFRKKIGLTYNLCTTPDTYRSICNNIATDLLNGAEFIYIGIDTDNVIRVVLDDGFASRVQYANQHGLFVPKINFTAFELGIDITLEFEDFRFINESAAGDQRDYRFIYETVITRLDYGFIE*
DelMOWin2010_1000010139	F042879	GGTGG	MLMSAKAKGRRTIFKAIEFFKNKDMIVDEVELGGRFRKSKDLFSGLCTKCWKHDCEHILEDTFDGFDLIAMDGTNVWLIQVKTNKPPTQKPYKRFAMTFSSKYIRVLAMTWYDRKGWVLHTFNKNGTVTKNDLRRKHNEKKDDTK*
DelMOWin2010_1000010144	F077249	GAGG	MAIQGRKKIKPITIDNRTVPEVKLKKVKVVAMPKVERSRKKVLSRGKIIGILDFTVYLINKRAVTMTWTWLKSRLKEPSTYQGVTAIAGAIGVTVQPDLYESIAALMLAIIGVIQTIKKEKEDDNLHNKNP*
DelMOWin2010_100001017	F027355	GAG	MGRITKVMGEFMGVRFEVKPTPIRFDKIVEDRRQMLLGWYKQNHPKTHKKIISESANFEDYNTQDLEAINGWRMDEEFRAKYCKFTADHCMKLETPIKDDVWKSDELELGTLEEAWDFFTNRRQVPLDGVGVL*