Scaffold DelMOWin2010_c10000062

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000062
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 52816
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (89.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022786	Metagenome / Metatranscriptome	213	Y
F034398	Metagenome / Metatranscriptome	175	N
F040080	Metagenome	162	Y
F042639	Metagenome	158	Y
F044813	Metagenome	154	Y
F052272	Metagenome / Metatranscriptome	143	Y
F061813	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000006211	F022786	GGAG	MTDLIIDQEKLAALEQAGLLKGRYYIVLEPLEDEDGDEDGFAIRAYATRDTQVEVDGTTMFDPTYVILQGLLGAVHEDFDNLYDMGLERVTLEALGEVVPEEELKPEHRDRIKSMEGNVITAKFGELQ*
DelMOWin2010_1000006214	F042639	AGG	MKTADIKKVVELQGKIIKLKDRIMKDVERHNTMVIDELRPLLDDVQYATIYQVGDMTYKRGKVFCQLDCNDYGLGIKADGLSTLRRIVVENKDAPSDDKESGSSASLSK*
DelMOWin2010_1000006226	F034398	AGGAGG	MIAEQYRNIKPHFVHAYHVPMVYRWSCILLDQDTENPPFQPARYFVVNVFAETKDAVLDCLGEEYPWCDIMYVDKALGGHSDDDFLESWLHHFDAREAIPVREAPHGTNYNK*
DelMOWin2010_1000006227	F061813	GAGG	MALTTTSRNENKTRVDYLVYKQVTEVLALVKQANETLNDTGDIDSDSLDNASSHLKCAIDMLDHYLRANA*
DelMOWin2010_100000623	F044813	N/A	MAEQKANLLNFSIELNRDGNIEFNLDCVDTVGMERTLRSLGDPAYPHKIGNIVRHYFRTLQDKIKEERA*
DelMOWin2010_1000006231	F040080	AGGA	MKTLETFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAADDLKPAKDNRALCSSHYRMLAILNEYGVMHREHVARLLGVKDQTVMQMMHVCRHHGLAHLKTRKGVVSIQSLADGVSDNTNFKI*
DelMOWin2010_1000006232	F052272	GGA	MKTETTLNFTAEQLNELKRIVDTIGWATRDDKTGHIDAYVSENRVKFAQNLAGVLGRMDTAAIVGSSEGI*