Scaffold DelMOWin2010_c10000059

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000059
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 53687
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (83.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039349	Metagenome / Metatranscriptome	164	Y
F042307	Metagenome	158	Y
F047993	Metagenome	149	N
F057283	Metagenome / Metatranscriptome	136	N
F063646	Metagenome	129	N
F093691	Metagenome	106	N
F100946	Metagenome	102	N
F103162	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1000005917	F039349	GGAGG	MIITKTDGHFIINSAAISLDGNNVVSFRDDAVVQEFGTKEEMLAAHEQQFPDQYVEEEAIQ*
DelMOWin2010_1000005939	F063646	AGGAG	MNHFIVEHYLSYSDKWLEVKTLSTLSEAEEYLIDHFDNTAAALDESDAGDMSVEIMMKSLKKNYRITEMEVV*
DelMOWin2010_1000005954	F057283	AGG	MATNAERMDRIESKIDKLSEVLVQMARVEEKLINQEEDHKVLRKDIYHLYEKVGEMEKVVQKNQITVNIINRISWIIITGVVGGFGTLITYLFNK*
DelMOWin2010_1000005967	F093691	GAGG	MNSYDKRLIERLRNWEKVYSEDEDKPEGNLYLEAAERIVELLKNQPEELDYTLDYDQDGLWLLQDGKQVSHIPQSLFDNRIRQIIRQSKSLDQLAKYDQEDDLIEKETPLYRTETISTDDLTLRRLKYSLQLCKETRDEMNKKRDMKGWTVRNQWDWDDIVQDIHALERIIDFYGH*
DelMOWin2010_1000005976	F042307	AGGAG	MIYHLKGHTKKGKQRIQEHGSVWEVLEKRPGTFEGLLLGSPKTGDIRWLTEDFFVERIEG
DelMOWin2010_100000598	F100946	AGGAG	MQNVWMVWQTVDFGQDWMMGVFASADAANAAMDDMFADWLSDRGMTAAQFAASQDAQPWSTMDDPFFVTTEDVQGG*
DelMOWin2010_1000005983	F047993	AGGAG	MLFLGLGAVGLTLTAIVGGWIVYNEFFAGDKEDTVENEVPLMTYFHDNEVLIEPQAGIKYIVEDDEGIDAQLTLNAVMNWVEEDDPNIFTGDWNVKVSTWNDAALVEIRGDASTLLKDRYDDVELPFFDGEGMIDFVTVDLEFA*
DelMOWin2010_1000005995	F103162	GGAG	VKQSNNMKQNKNNVNLKGETKTGKELAPQKLTTVKDDVKFYKPDGTYCTLNECIDKFDSVIQVVEKTVKRNQHYAYYHVCNECGRKRMSSRNKTDTAQSKRRADLGYIEVEKEDNE*