Scaffold DelMOWin2010_c10000020

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10000020
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 78516
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (83.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016674	Metagenome	245	Y
F020255	Metagenome / Metatranscriptome	225	Y
F040721	Metagenome / Metatranscriptome	161	Y
F078587	Metagenome	116	Y
F093998	Metagenome / Metatranscriptome	106	N
F100963	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100000204	F040721	AGG	MTKARELADFGQAITVVDNKINIDRTIEVPGLLDSAQVLVISTDSSEVTTIADNQALLNSLIFGG*
DelMOWin2010_1000002052	F020255	AGGAG	MPSPSEIQSMLPLYFQLLFFAVAGALIVGVFFSIVGWFFRNAVVIMIIVAILFAINYGYVDLNKLFGAVKNDNASITNLLQQ*
DelMOWin2010_1000002055	F016674	N/A	MTKKKSNVINFKKEKLKKFDEENEIVFTVEDENYTLGEMVHQAHNDNGMEFVFKLDLEDDDETIH*
DelMOWin2010_1000002084	F093998	GGA	MNTSRSVFKDTLAMSMGMDRVLNEISFWENKSKKVKSVKKRLERLYAARTQLVENPKESKSLVDQLKEINQS*
DelMOWin2010_1000002086	F100963	GAGG	MTDGPLKRAFDLLDSEGVLSRELTTFKIRGSQLVKEVVTRTYYNNDYIDKIAITPIYKIEGEK*
DelMOWin2010_1000002096	F078587	GGAG	MFNTILTSIKSNGEQVQRVYQGETEKLSVYFATNLWSTYDKDIGEELVSLETTDRDISNRSLYMIDNRNLCTMHSKDIELHS*