Scaffold DelMOSpr2010_c10123987

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10123987
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F020342	Metagenome / Metatranscriptome	224	Y
F074820	Metagenome	119	Y
F089995	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_101239871	F089995	N/A	MKESADKHGVGFIGGFVAPNGEKFVMSNMDDDETQALLPDNLK*
DelMOSpr2010_101239872	F001120	N/A	MTKDKSPLNFDKTIAGFNVTERGVQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRGIRIL*
DelMOSpr2010_101239874	F020342	N/A	MSAFTDNLNMFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLVKYSTYSYIEDN*
DelMOSpr2010_101239875	F074820	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEW