Scaffold DelMOSpr2010_c10073294

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10073294
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1383
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100732941	F019643	N/A	SAIKIWIINTRRYTMAKYYIKSGTLEIIFSTELEPYDACRRVIHECNSNDELDEYMYLDERGYRDYTSADTTTFVVDSEQILRKEGYIR*
DelMOSpr2010_100732943	F065685	AGGAG	MKPVVGIGSNTKYGRVLKVQHDGVVVENGRGEREIVSFRKIESTLKGVKK*
DelMOSpr2010_100732945	F052546	N/A	MMKGLVLGTPMIIFNKSYNTAATGILVIASIFSGCAIIPNRNTLTLNKTIELDERAIEKL