Scaffold DelMOSpr2010_c10073099

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10073099
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1386
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100730991	F024320	AGGGGG	MTFEEYEQGYYSGDSEDNSGPPEDPETHAMVELLVEFETEMYRLDCRRRLQGLNRRHLESLLVDLHGEEWRDAL*
DelMOSpr2010_100730992	F023856	GGAGG	MRCRACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTXXEKYDTLY*
DelMOSpr2010_100730994	F002858	GGAG	MLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFLASDELPEGEG*
DelMOSpr2010_100730995	F001655	GAGG	MKQPENSHTKHFGNDGPIGNDAEIIVYYEQRGPAEPVLRIPFWYCKDELGMHEHFEASVRRTAKALAESYTYWPEGYVHVQTTINEEYVNII*