Scaffold DelMOSpr2010_c10072366

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10072366
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1396
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F044444	Metagenome / Metatranscriptome	154	Y
F074791	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100723661	F002333	N/A	AGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWHHAHALGHLTSNAKLQTYWADRFIHVTDPTKVITLLQSDQTDIGHLVAPDGMRLPNRPLDLGSDMETQESDIPAVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFGKYRELLCKRTDARNASPSGTPEKCVAWWYQPPADSVSDGRFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKK*
DelMOSpr2010_100723662	F044444	N/A	MTDDILEYARQLATQPMTISHLRYELDIPENTHWELVKLAADLKMHHEDYAINVLISHVESELDRKTKD*
DelMOSpr2010_100723664	F074791	N/A	MSIDSYGLSSEQYTEFFHKNVRLAAKLYLDTCTILNEEGVGNIDFKTVLDMYQEAVYTANDDCRRYQK