Scaffold DelMOSpr2010_c10070542

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10070542
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F043088	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100705423	F018451	GGAGG	MSKYIDVQSHNPKAVVPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV*
DelMOSpr2010_100705424	F043088	AGGAGG	MKRLDGIYRGYDIFEKDNVWKIELEGKTITTFDKIDGVDGKASCMTEIDRIKREDIRDREINIQRIDAQVKATRDGGV*
DelMOSpr2010_100705425	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDIMAIRKEQFPLLHYTITLISKKLDDTSNRMITDVDPNTCDPSTLHLNSQTIE*