Scaffold DelMOSpr2010_c10069490

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10069490
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F023451	Metagenome	210	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100694902	F023451	N/A	MKDKKWINFKKPMFIGVDYDCKFNPLKDWQQALKLKIDDDVIGYDFKIVAYKKVKISEEG
DelMOSpr2010_100694903	F089429	AGGAG	MKNKNINIYSIFSRTYKKKMFPFMDFGEIGILKKGKTIRQVSNVYQFPIHQYYNQKRRFK
DelMOSpr2010_100694904	F002768	AGGAGG	MKNSWWKLTIEDYPNYKPNDIDLEHIAECIKQGYDNGQLIQEDEEQDNEE*