Scaffold DelMOSpr2010_c10069017

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10069017
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1446
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F024204	Metagenome	207	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100690173	F004343	AGGAG	MTQHKEMIEEAKRLLNSKRENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKKDVIIQESY*
DelMOSpr2010_100690175	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPQKYIQGFDDLTHRQQEEILRFVSLDEHRIDKLLNLPMGET*
DelMOSpr2010_100690176	F024204	AGGGGG	MNNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINKGEL*
DelMOSpr2010_100690177	F008882	N/A	KRYNFNKPKINRQELELLNWFLAHTNDNPLINPEALELFRANGYSAMNYQDLVNKVKTILKTYKTKGEL*