Scaffold DelMOSpr2010_c10065276

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10065276
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1508
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007947	Metagenome / Metatranscriptome	342	Y
F011124	Metagenome / Metatranscriptome	295	Y
F016757	Metagenome / Metatranscriptome	245	Y
F032478	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100652761	F032478	N/A	RGSIMYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHVELEFVKEFDSE*
DelMOSpr2010_100652763	F007947	GAG	MLDCHTILCLQNQMPDVGMDDLLVIGYLVVGLGIVIYLVMDALKEK*
DelMOSpr2010_100652765	F016757	AGGAG	MPKYEVKVEATTQRDIIVDAVSEYEAWIKAQIEMVGLVGGENTQVISSKEIDDA*
DelMOSpr2010_100652767	F011124	AGGAG	MFDPDKTYGTLVWDMTIAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLHERDEGGTYA*