Scaffold DelMOSpr2010_c10063772

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10063772
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1534
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F042853	Metagenome / Metatranscriptome	157	N
F059441	Metagenome	134	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100637721	F004856	AGGAGG	MSDWLEGTKPKIIEARYSAYLSWDLDELGIDWDDIEDWDLSRADLEITFKDGTKKTYENWQDLDIDYKHNFEEV
DelMOSpr2010_100637722	F102056	GAGG	MNKEFEKELVELLNKYYSTNWDYVWEFIGDTIETKLWLGEEVDDE*
DelMOSpr2010_100637724	F059441	AGGAGG	MKTWSSTITYTVFDVGADCETKEDYIEYVKETFEQEHNIYLRDDEITDIQKEESYNE*
DelMOSpr2010_100637727	F042853	AGGAGG	MNKEGTYLIEIERHYIATIEVDAESEGQAKRYASSDENQHIANRNEDYFYHFDDLLHKATVSRFESYEEQYPEEV*