Scaffold DelMOSpr2010_c10058412

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10058412
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F026889	Metagenome / Metatranscriptome	196	N
F056585	Metagenome	137	N
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100584123	F002858	AGGAG	MAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRADPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILFLASDELPESQTTSTEVDQ*
DelMOSpr2010_100584125	F071124	AGG	MTYAEYELGYYMGDSEDCSGPPEDPETQAMLEHLIEYETEMYRLNCKKRLSGCTYKQLKGLLINLHGEDWKDAL*
DelMOSpr2010_100584126	F056585	AGGAGG	MTRETWEMWADEYQEYYENETPVYPDDIEEWKKEEQKVIDEVIRAIQGLSS*
DelMOSpr2010_100584129	F026889	N/A	NEYLALVERTVYHRDLDAFDALEQLEEDYPELADLVYQAAGPLAYDIQNNEVTS*