Scaffold DelMOSpr2010_c10058297

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10058297
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1640
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F019560	Metagenome	229	Y
F024421	Metagenome	206	Y
F031263	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100582972	F002594	N/A	MAKIPISRLNSAPEKYAANEFNQLIEDLQDMVKILNSTYPKDQNDETERKNWFFMRGTG*
DelMOSpr2010_100582973	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLSNGAVTVEMVNISKEVKXVEREIKEVVEHQ*
DelMOSpr2010_100582974	F011527	N/A	MLVYFQFRRCGYYARGLVEADSLDAASRALWAEHVGTFKWEDQTNDMPENANXLTIEEYKYERSSDGKTEPENETRSQVG*
DelMOSpr2010_100582976	F019560	N/A	MLQDIYVNTRKENKMQKVKIKFSVITPCEKEYEIVDQELWDFGKDRFTEVAKSDDCQEIFSDERIYGLKPIENSFYEDSPNREVHKVENVVIDGKNQWY*
DelMOSpr2010_100582977	F031263	N/A	YLIIILNNGNDYELRRIISYEELSCFDWYLKNIEFRDNKTNKYNDLYVAGYICQYEKGE*