Scaffold DelMOSpr2010_c10052863

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10052863
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1765
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F033796	Metagenome / Metatranscriptome	176	N
F072342	Metagenome / Metatranscriptome	121	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100528631	F086976	N/A	KIPDLDSNGKFVTPLSGNEVYKTRKEVVNANLSGEISTERFYELLGVYMEAEDEAPEYGFVGVGCISFAEAMLQEYQDGVIRRIRIPTLYDEYSFKQESNDE*
DelMOSpr2010_100528634	F072342	AGAAG	MSKEIDWHKARVKKQMKTKKVLKQMSDEQREAIQEIQKSVASCLEMIKDCNDLYMSDVAKLESSWHSLRWAFEVDEV*
DelMOSpr2010_100528635	F033796	GAGG	MAENKTYKVAGVHSGKKGVTVLEGNKRVLEEAEQSAXXLXGXYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQIGGSI*
DelMOSpr2010_100528637	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGQIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGTEV*