Scaffold DelMOSpr2010_c10050397

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10050397
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F033067	Metagenome / Metatranscriptome	178	N
F078591	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100503973	F078591	AGG	MTYFKGVCSIESSVKYLSSGRSAVQNLVKTTIFKGLTFKSIPDTIKTY*
DelMOSpr2010_100503975	F007835	GGA	MPFGPTTLRNTREEFVLQKIEYYKVTEYMGRSNWKRHYFDTYKEAVKMFKKLKEVKRKVLIYACRDDELGELSTGINDRFKNE*
DelMOSpr2010_100503976	F033067	N/A	MHDLLRPLEDLKEIKESLGEGTDNKTMELINTKIGEYESDIKAVEEYLKNESEKYDNSILDEVNTAHATTSVQVNGTEDK*